A framework for developing bioinformatics workflows for Virtool.

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Project description

Virtool Workflow

Tests

A framework for developing bioinformatic workflows in Python.

from virtool_workflow import step


@step
def step_function():
    ...


@step
def step_function_2():
    ...

We require specific commit formatting. Any commit that does not follow the guidelines will be squashed at our discretion.

Read our commit and release documentation for more information.

Run tests with:

# Bring up Redis and the test container.
docker compose up -d

# Run tests in the test container.
docker compose exec test poetry run pytest

Run specific tests like:

docker compose exec test poetry run pytest tests/test_status.py