Skip to main content

Software package that identifies raw signal changes between two conditions from https://github.com/jts/nanopolish resquiggled dRNA-Seq data.

Project description

Nanocompore


GitHub license Python BioRxiv

PyPI version Downloads Build Status


Nanocompore identifies differences in ONT nanopore sequencing raw signal corresponding to RNA modifications by comparing 2 samples

Nanocompore compares 2 ONT nanopore direct RNA sequencing datasets from different experimental conditions expected to have a significant impact on RNA modifications. It is recommended to have at least 2 replicates per condition. For example one can use a control condition with a significantly reduced number of modifications such as a cell line for which a modification writing enzyme was knocked-down or knocked-out. Alternatively, on a smaller scale transcripts of interests could be synthesized in-vitro.

Full documentation is available at http://nanocompore.rna.rocks

Nanocompore

Companion repositories

Main authors

  • Tommaso Leonardi - tom {at} tleo.io
  • Adrien Leger - aleg {at} ebi.ac.uk

Project details


Download files

Download the file for your platform. If you're not sure which to choose, learn more about installing packages.

Source Distribution

nanocompore-1.0.4.tar.gz (226.5 kB view hashes)

Uploaded Source

Built Distribution

nanocompore-1.0.4-py3-none-any.whl (232.3 kB view hashes)

Uploaded Python 3

Supported by

AWS AWS Cloud computing and Security Sponsor Datadog Datadog Monitoring Fastly Fastly CDN Google Google Download Analytics Microsoft Microsoft PSF Sponsor Pingdom Pingdom Monitoring Sentry Sentry Error logging StatusPage StatusPage Status page