A collection of tools for data analysis and plotting that originated in the McCutcheon Lab (UiT, Tromso)
Project description
trompy
A collection of tools for plotting and data analysis from McCutcheon Lab based at UiT in Tromsø, Norway (hence trom-py). We study ingestive behavior and motivation in rodent neuroscience experiments but code may be useful in other settings.
Highlights include:
GUI for analyzing lick patterns in rodent feeding and drinking experiments[^1]GUI for analyzing fiber photometry data from rodent neuroscience experiments- Function for plotting bar plots with individual data points
- Function for reading data files produced by Med Associates behavioral equipment
- Functions for analyzing patterns of licking in rodent experiments
- Functions for performing ROC (receiver-operator characteristic) analysis
[^1]: GUIs are now available as separate packages: https://github.com/mccutcheonlab/Lick-Calc-GUI and https://github.com/mccutcheonlab/photogui
Code is maintained by James McCutcheon, Dept of Psychology, UiT The Arctic University of Norway.
Installation
The simplest way to install is via the pip package manager. Briefly, from a terminal run
pip install trompy
Dependencies will be automatically downloaded but are also listed in environment
Previous versions
https://pypi.org/project/trompy/#history
How to cite this project?
Please email jmc010@uit.no to get instructions on how to properly cite this project.
Contributing
You are welcome to contribute to the code via pull requests. Please have a look at the NLeSC guide for guidelines about software development.
Project details
Release history Release notifications | RSS feed
Download files
Download the file for your platform. If you're not sure which to choose, learn more about installing packages.