Scipion plugin in order to use ther kiharalab software
Project description
Kihara Lab plugin
This is a Scipion plugin that offers different Kihara Lab tools. These tools will make it possible to carry out different functions for working with electron density maps. The code involving these functionalities can be found at https://github.com/kiharalab.
Therefore, this plugin allows to use programs from the DAQ software suite within the Scipion framework.
Install this plugin
You will need to use Scipion3 to run these protocols.
DAQ, Emap2sec, Emap2sec+, and MainMast are installed automatically by scipion.
Note: Emap2sec+ needs an Nvidia GPU to run.
Install the stable version
Through the plugin manager GUI by launching Scipion and following Others >> Plugin Manager
or
scipion3 installp -p scipion-em-kiharalab
Developer’s version
Download repository:
git clone https://github.com/scipion-em/scipion-em-kiharalab.git
Install:
scipion3 installp -p path_to_scipion-em-kiharalab --devel
Protocols
scipion-em-kiharalab contains the following protocols:
DAQ model validation: Executes the DAQ software to validate a structure model
Emap2sec: Identifies protein secondary structures
segment map: performs the segmentation of maps into different regions by using mainmast software
Packages & enviroments
Packages installed by this plugin can be located in /path/to/scipion/software/em/.
The following packages will be created:
daq-version
emap2sec-version
mainMast-version
Where version is the current version of that specific package.
Also, the following conda enviroments will be created:
daq-version
emap2sec-version
emap2secPlus-version
As of today, Scipion does not automatically uninstall the conda enviroments created in the installation process when uninstalling a plugin, so keep this list in mind if you want to clean up some disk space if you need to uninstall scipion-em-kiharalab.
Changelog
All the recent version changes can be found here.
Project details
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Source Distribution
Built Distribution
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