Python package for Next Generation Sequencing fragment manipulation
Project description
Next Generation Sequencing fragment manipulation
This is a Python package for easy and efficient manipulation of Next Generation Sequencing reads.
Install
If you dont already have numpy and scipy installed, it is best to download
Anaconda
, a python distribution that has them included.
https://continuum.io/downloads
Dependencies can be installed by:
pip install -r requirements.txt
PyPI install, presuming you have all its requirements installed:
pip install NGSfragments
Usage
from NGSfragments import fragments
import numpy as np
# Create data
frags = fragments("test_bam.bam", verbose=True)
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