A Beta project LevSeq vis

Web app for combining and visualising LevSeq sequence function data.

Test it out with the data in the data folder. Use the columns in the screenshot below.

Once you have your figures you can download the csv results by hovering on any of the tables.

Upload with data

Using the visualization_partial.csv file as the variant file and the 300-1 in the ep1 folder.

Tables for download

We join the data based on user selected columns (in this case cis and trans) from a LC-MS run.

Overview of alignment count

The alignment count is how many reads assigned to each type were assigned to each well.

Scatterplot of multiple features

This shows the fitness values of two plotted against eachother, if only one feature is provided we will plot it against the alignment count.

Please provide feedback

Leave a feature request in the issues or on LevSeq .

Cite

Cite our paper please if you use it.

Developers

streamlit run app.py

References

Streamlit app based on: https://share.streamlit.io/streamlit/example-app-csv-wrangler/ Thanks to you who made it <3