Antimony Model Creator - Olivia Walsh, Matthew Van Ginneken

This package allows the user to visualize a reaction via a steady state graph. The user can create and submit their own reactions on the Flask Webpage, or they can submit an antimony txt file or a SBML file also through the webpage. The Webpage will run a simulation using the reactions with tellurium and show the steady state graph.

Installation

To install this package the user should open up to their terminal and use pip install to install the package

pip install AMC-OWMVG==1.1.0

Once the terminal has confirmed installation, the user must create a new folder in their desktop and move to that directory

cd Desktop
cd newFolder (replace newFolder with the name of the folder)

Within this folder the user has to create a file and another folder called static. We recommend using an IDE or an editor to make these.

static (a folder)
runApp.py

Within the static folder the user should make two .txt files that are empty.

antimony1.txt
antimony2.txt

Going back to the file runApp.py the user should type out the following into the file

import AMCowmvg
from AMCowmvg.testing import runApp
runApp()

The user should then run the runApp.py in their terminal

python runApp.py

This will produce a few lines of response including a website link, the user should copy and paste this into their browser. The user now can create and visualize their reactions

## Installation if you have access to the StarterAMC folder

If the user has access to the StarterAMC folder they should download it to their desktop then run through the following commands

To install this package the user should open up to their terminal and use pip install to install the package

pip install AMC-OWMVG==1.1.0

Once the terminal has confirmed installation the user must navigate to the StarterAMC directory

cd Desktop
cd StarterAMC

Once the user is in the correct directory they should run the runApp.py file from their terminal

python runApp.py

This will produce a few lines of response including a website link, the user should copy and paste this into their browser. The user now can create and visualize their reactions